PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 297aa MW: 32145.7 Da PI: 7.1423 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.1 | 6.5e-15 | 246 | 280 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++C+ ++ Tp++Rrgp g+++LCnaCGl+++ k PGSC0003DMP400056068 246 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANK 280 *****99999**********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.6E-12 | 111 | 146 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.818 | 111 | 146 | IPR010399 | Tify domain |
Pfam | PF06200 | 8.9E-13 | 114 | 145 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.126 | 178 | 220 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.3E-16 | 178 | 220 | IPR010402 | CCT domain |
SMART | SM00401 | 3.1E-7 | 240 | 292 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-9 | 241 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-12 | 244 | 280 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.09E-10 | 245 | 280 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 246 | 273 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.6E-13 | 246 | 280 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AGGGGGGGGS GGGIESMDNP 60 TPHIRYDQHH HSHSHALHNG GAGGSMEMNG VEGVSHNALY GPSSEIVPTA GSGASDQLTL 120 SFQGEVYVFD AVSPEKVQAV LLLLGGYEVP PGIPAVNVAP QSQRASGDFP GRLNQPQRAA 180 SLNRFREKRK ERCFDKKIRY TVRKEVAMRM QRKKGQFTSA KSIPDEVGSS AEWNEGSGQE 240 EQETSCRHCN ISSKSTPMMR RGPAGPRSLC NACGLKWANK VSIELKIHSF PWFLFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056068 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351719.2 | 0.0 | PREDICTED: GATA transcription factor 28-like | ||||
Swissprot | Q8H1G0 | 5e-72 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | M1D740 | 0.0 | M1D740_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083773 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-73 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056068 |
Publications ? help Back to Top | |||
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