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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400055871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 14981.2 Da PI: 8.3149 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.7 | 8.1e-15 | 7 | 54 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ k+n+ ++ R++ i K EL +LCd++v+ +i +++g+l++++ PGSC0003DMP400055871 7 SKKKTNNPKSYQVRKECIKRKSMELATLCDIKVCTVITGPNGELQTWP 54 7899*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.85E-15 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.475 | 8 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-10 | 9 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MADEDQSKKK TNNPKSYQVR KECIKRKSME LATLCDIKVC TVITGPNGEL QTWPDNLDAC 60 KEVLDLYSQN LKPEKKHKES STPIPEPEEE QGEKDLLTIV ESKLVAVNRR IRFLENKNVA 120 LADKGKRKII E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400055871 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349351.1 | 6e-87 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
TrEMBL | M1D6N0 | 4e-90 | M1D6N0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083172 | 6e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39810.1 | 3e-11 | AGAMOUS-like 98 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400055871 |
Publications ? help Back to Top | |||
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