 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400055009 |
| Common Name | LOC102581508 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 180aa MW: 20760.2 Da PI: 8.3454 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400055009 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.4 | 5.8e-19 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ +++++q++ Le F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k
PGSC0003DMP400055009 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 69
67789************************************************9 PP
|
| 2 | HD-ZIP_I/II | 111.4 | 6.1e-36 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+ e+ne+L+ eve+Lr+e
PGSC0003DMP400055009 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKTLQQRLDNALEDNEKLKLEVERLRKE 104
69**************************************************************************************9 PP
HD-ZIP_I/II 91 lke 93
l++
PGSC0003DMP400055009 105 LNK 107
975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MNFLSSQTRK IHLKCHKKRL NQDQVRLLEI SFSSNNKLDS DRKSQLAQEL GLPPRQVAIW 60
YQNKRARWKS QSLEVDYKTL QQRLDNALED NEKLKLEVER LRKELNKNQE VLLGFNTTTN 120
NYSSISSSCD EVGSTSCLQL HDQSKHNHLD KEFYACLIGD EGHFGTHHDG HNFFASSLS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 8 | 18 | RKIHLKCHKKR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
