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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400054315 |
| Common Name | LOC102578532 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
WRKY |
| Protein Properties |
Length: 252aa MW: 27502 Da PI: 8.0841 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400054315 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 103.1 | 1.5e-32 | 177 | 235 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
PGSC0003DMP400054315 177 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 235
59********************************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MERGSEERNQ LNNYNLQVSF SSSSSAAAPN HVHHELGFIH FADQNLSFLA PSSQSSQSLQ 60
AAAAAAAAAA SVSVTPSAAI NTNAAAAGAS NNVGGGGGGL GFSHNELLVN RPSWNNNEQV 120
ETLDPKGIND ENCSGNASEG NNSWWKSSSS DKGKVKIRRK LREPRFCFQT RSDIDVLDDG 180
YKWRKYGQKV VKNSLHPRSY YRCTHSNCRV KKRVERLSED CRMVITTYEG RHNHSPCDDS 240
NSSDHDCFTS F*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 1e-85 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Yu Y, et al.
MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
Plant Sci., 2013. 212: p. 1-9
[PMID:24094048] - Yang L, et al.
PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
Sci Rep, 2016. 6: p. 18643
[PMID:26819184] - Li W,Wang H,Yu D
Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
Mol Plant, 2016. 9(11): p. 1492-1503
[PMID:27592586] - Han Y, et al.
WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
Plant Mol. Biol., 2019. 99(1-2): p. 149-159
[PMID:30617455]
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