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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400053936 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
SRS |
| Protein Properties |
Length: 220aa MW: 24684.3 Da PI: 8.2393 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400053936 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 194.3 | 4.1e-60 | 17 | 157 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93
+++CqdCGnqakkdC++ RCRtCCksrgf+C+thvkstWvp+a rr r++ ++ ++++ ++++++ ++ + + ++ + ++
PGSC0003DMP400053936 17 SSRCQDCGNQAKKDCTYLRCRTCCKSRGFHCETHVKSTWVPVATRRPRHHLHHHHHHSTIQQQQQQLQNGP---------NPKRYRSNE 96
579********************************************976665544433333322222222.........222222223 PP
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
e ++P evss+avfrc++vss+d++ +++aYqt+v+i+GhvfkGiLydqG+++
PGSC0003DMP400053936 97 VMIGDDHEGGHFPGEVSSPAVFRCIHVSSIDNAVDQYAYQTSVKIAGHVFKGILYDQGPDN 157
33334567889************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MRREEEEEGR VSSSLSSSRC QDCGNQAKKD CTYLRCRTCC KSRGFHCETH VKSTWVPVAT 60
RRPRHHLHHH HHHSTIQQQQ QQLQNGPNPK RYRSNEVMIG DDHEGGHFPG EVSSPAVFRC 120
IHVSSIDNAV DQYAYQTSVK IAGHVFKGIL YDQGPDNESP RYNNYMAGES SSSGFQLHQP 180
PILPTTTTTS PPPPSSTFPN LFSAFNMPGT QFFPYPKSS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 1e-155 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
