PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053332
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 324aa    MW: 35931.1 Da    PI: 5.4173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053332genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-14147194355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h  +Er+RR+r+ + f +L +l+P++     kKl+Ka+iL  A+ YIk+L+
  PGSC0003DMP400053332 147 QDHVLAERKRRERLTQYFVTLSTLIPNL-----KKLDKASILGDAITYIKQLE 194
                           56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-12147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-15149198No hitNo description
SuperFamilySSF474593.66E-17149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMATFDDFPF NNDLFTSCTF DNIQASQAAA GIFEEKPAFC SSTKAIYQNN TTFSSPPSSS  60
PSVISFSNSN SPSATPTTTA QNYFENLNTS VKTEIPSGTT LNFSSSNTSP DSDYDDSKQL  120
FQAMGFGADD ISQTKKMNYS RTPLQAQDHV LAERKRRERL TQYFVTLSTL IPNLKKLDKA  180
SILGDAITYI KQLEEQVKRL DEEANKEPVV AVKRSRLLSN YDNSSTCNEN SNKSVVPDIE  240
VRASDGNVLI RVSCKKQEGI IKEIFSQVEM FHLTITSSSV IPFGYDTTHI TIVAQMDHQL  300
NMTTDNVANK IRLSIMKVIN SHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-130HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357745.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLM1D0K40.0M1D0K4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-47bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]