PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052893
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 465aa    MW: 52050.3 Da    PI: 6.7208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052893genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09414462247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           ++W+  E++ l  +v+++G+g+Wk I  t       Rt+ ++k++w++ 
  PGSC0003DMP400052893 414 MKWSSLEEDTLRTGVQKYGTGNWKVILDTYHgifSVRTACDLKDKWRNM 462
                           69*****************************9**7799999******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.667408464IPR017930Myb domain
SuperFamilySSF466899.36E-14410463IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-11410463IPR009057Homeodomain-like
PfamPF002492.1E-7414462IPR001005SANT/Myb domain
CDDcd116602.78E-15415463No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDIDTDISHW ILEFILRQPL DDGILNDLIH VLPLSNDKPN LKKALLIRKI ESEISNGSVN  60
EKILEFLELI EELNHQDGIE ASEVMKAAYC AVAVECTVKF LNSEGTGGNK GKYFDAVRRI  120
WKRRINLMEK MENVGFVSEE LWSWRDEIEA ALWDDKCSYS VIRKSKGIVA VELVKFFVRE  180
AKERMGSPFL DVVAETYQSD ETMKALFGEV NKEGACCGND REVSKGSALR RKKHVAFKRT  240
RGGIRISDSI ESELEASGGG GQDGLPPSAE IQKAEKALKL SSLELRAMVK DPLPDALRLA  300
ETLSLARDNM GHQPAENSSD IAPPPMASSS RMVQASGEKC EAQHNCHDNA ASKPDRVNQN  360
SAANPLELDD FFDEVTERSP SKANRVTLPT PKTTKVSPLK KYEFKKITTR RKPMKWSSLE  420
EDTLRTGVQK YGTGNWKVIL DTYHGIFSVR TACDLKDKWR NMIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052893
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267260.0AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350882.10.0PREDICTED: uncharacterized protein LOC102603861
TrEMBLM1CZF90.0M1CZF9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000781280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-26MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]