PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052828
Common NameLOC102585494
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 373aa    MW: 41944.8 Da    PI: 8.3767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052828genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05136159123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+C+ Cg++F ++ +L +H++  H
  PGSC0003DMP400052828 136 YPCTLCGEVFQSPIHLDQHQSIkH 159
                           99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0054136159IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951136160IPR007087Zinc finger, C2H2
PROSITE patternPS000280138159IPR007087Zinc finger, C2H2
SuperFamilySSF563992.97E-13161371No hitNo description
Gene3DG3DSA:3.90.228.105.9E-5163276IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.105.8E-5307371IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MATVFRPLFS NFLSLLFLLL HLGCFISSQN HSSKKRKLSS NRDSSPPPPS TRLKSSTTNV  60
ISSSWSYIKR IFSSNKQKII NTRTHHNPSI QSPCSSTRSL QKPISSDDPI NRSVSPIPES  120
EITSDQLFFS LRNDIYPCTL CGEVFQSPIH LDQHQSIKHA ISELTDGDSG NNIVRIIFQT  180
GWVDKAKNPV INRILKIHNS KRILSRFEEY RECVKLKASR NAVVKRDERC IADGNELLRF  240
HCTTFICELG QNGNSSICTQ QYCSVCGIIK SGFSHKMDGI SMQPTSWRGH VSVPEEIEEE  300
FGFMNVKRAM LVCRVIAGRV GSDPDYVDKE DSGFDSLVGR ENGSQMRLDE EDELLVFNSR  360
AVLPCFVIVY TV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052828
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350826.10.0PREDICTED: uncharacterized protein LOC102585494
TrEMBLM1CZA00.0M1CZA0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]