PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400052021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 106aa MW: 11873.1 Da PI: 7.1814 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 72 | 101 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 ++ +hn+ Er RR++iN ++ Lr+llP++ PGSC0003DMP400052021 72 KKLNHNASERDRRKNINGLYSSLRSLLPPS 101 6789************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.1E-8 | 63 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.347 | 71 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 71 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.54E-8 | 72 | 101 | No hit | No description |
Pfam | PF00010 | 5.9E-8 | 72 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MLAISSPMFS TNYNNFGWLL EDPISQQINI NPMEPLHSSS SSQKNLQHSD SNKFDQITIN 60 GGDHHQSDQT VKKLNHNASE RDRRKNINGL YSSLRSLLPP SDHTV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400052021 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-131 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 1e-131 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351394.1 | 2e-71 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | M1CXD3 | 2e-70 | M1CXD3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076775 | 3e-71 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400052021 |
Publications ? help Back to Top | |||
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