PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051886
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 414aa    MW: 45942 Da    PI: 8.1806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051886genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81e-28168228159
                           ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kgs+ +pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  PGSC0003DMP400051886 168 MNDGCQWRKYGQKIAKGSPnCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 228
                           58***************9736*********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-31153230IPR003657WRKY domain
SuperFamilySSF1182901.44E-25161230IPR003657WRKY domain
PROSITE profilePS5081126.911163230IPR003657WRKY domain
SMARTSM007742.3E-35168229IPR003657WRKY domain
PfamPF031067.0E-26169228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLEKEMKRMK EENKVLRKAV EQTMKDYYDL QAKFSIHQNN HKDHKNFLSL SGNDDTSEGQ  60
TRVPKILDIL NTNRITSPTS LEDDTMDGDH ELGLSLTLVS SNSTTSSKLV EILEEDQRKE  120
KKDHPSINHQ IQNKPQNLGG LTSHVTTASP PNRKSRVSVR ARCESATMND GCQWRKYGQK  180
IAKGSPNCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT YEGTHNHPLP VGATAMASTA  240
SAAASFMLVD SSISPLFNHN SNLNQPLNFP NYHHNLAPNY HHSSSSPYNF SNLRNNILNS  300
SDPNSSQGNL VLDLTKNMSN NNHQFPFASS SSNNHELGHS NWMSKLSNYE GNNLFAGPKL  360
QGEHHYNNNN NIPPMLAHEN MSAITSDPKF RVAVAAAISS LINKDQSNST GES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21155232176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051886
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166103.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F05e-72WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLM1CX140.0M1CX14_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000765910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-59WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]