PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400051365 | ||||||||
Common Name | LOC102591583 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 519aa MW: 57342.7 Da PI: 9.2413 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 66 | 86 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H PGSC0003DMP400051365 66 CEVCNKGFQREQNLQLHRRGH 86 *******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + ks+ k H +t+ PGSC0003DMP400051365 141 FKCEKCSKKYAVKSDWKAHSKTC 163 89*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-6 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.09E-7 | 63 | 86 | No hit | No description |
SMART | SM00355 | 0.025 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 106 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 129 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.09E-7 | 136 | 161 | No hit | No description |
SMART | SM00355 | 82 | 141 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MAGGSSTSSM FFGMRDEELS QNQQENLLQA QAPSKKRRNQ PGTPSPDAEV IALSPKTLMA 60 TNRFLCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNTKEV AKRKVYLCPE PTCVHHEPSR 120 ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVKSDWKAHS KTCGTREYRC DCGTLFSRRD 180 SFITHRAFCD ALVQENARNI LSPNSLMNTL GMNNNQYLYG SSSNINLGTF SKLGNNNNNI 240 TKTTTSGVQF DHHHDNNLIG SSTTTTTTNN PFFLQETNQD YNPNNNIKPL MVHGLMQLPN 300 LDQNNDNNNS SSTMFNLNFF QNNLSTNSGI LGDHHHDNNN ISCSIPSLYG VQVLESSNTT 360 CSSGPIMSAT ALLQKAAQMG SSSTSNISAT ASLFKAFGST SGSSSSGTKS DHPAFNFGSD 420 ITVDGGIINA YGGGSHEGLY NTSTKLNFEQ HQGPPQKKQL TRDFLGVGEI VRSMNGRFST 480 QREQQQQQNN GLNNMMSSLL DPERNQIQQS FGSATNFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-32 | 137 | 214 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-32 | 137 | 214 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400051365 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355017.1 | 0.0 | PREDICTED: protein indeterminate-domain 4, chloroplastic-like isoform X1 | ||||
Swissprot | Q8GYC1 | 1e-129 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | M1CVT2 | 0.0 | M1CVT2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400075837 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-110 | indeterminate(ID)-domain 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400051365 |
Entrez Gene | 102591583 |
Publications ? help Back to Top | |||
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