PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051174
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 351aa    MW: 39093.3 Da    PI: 8.0756
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051174genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.33.2e-2471115145
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           d+epgrCrRtDGKkWRC +++++++k+CErH+hrgr+rsrk++e+
  PGSC0003DMP400051174  71 DPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVES 115
                           79****************************************986 PP
2QLQ62.71e-211045237
                   QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                          +FTa Q+q+L++Q+++yKyL+a+ PvP++L+++i++
  PGSC0003DMP400051174 10 PFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRR 45
                          9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-12945IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.3E-161044IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.0181045IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.81171115IPR014977WRC domain
PfamPF088792.8E-2072114IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAAENGYRPP FTAVQWQELE HQAMIYKYLV AGIPVPADLV VPIRRSFEPI SARFFHHPSL  60
GYCSYYGKKF DPEPGRCRRT DGKKWRCAKD AYPDSKYCER HMHRGRNRSR KHVESQSTAQ  120
SLLTSMSHNT TGSSKTSGNF QRSSSGNFQR SSSESFQNTP LYSAANTEGP SYGSATTKMQ  180
MEPATYAVDS KGYFHGMTAD ADEQNFSLEA SAGTRSLGMG SNTDSMWCLM PPPQLPSSPM  240
VKPKNDSQLL DSSRHIRMPN PFEPMNDTTI SGQHQHCFFS SDIGSPGTVK QEQRSMRPFF  300
DEWPTTKESW SNLDDEGSNK NNFSTTQLSI SIPMAPSDFS SRSSCSPNDA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342493.10.0PREDICTED: growth-regulating factor 4-like isoform X2
TrEMBLM1CVD70.0M1CVD7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000755630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-48growth-regulating factor 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]