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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400051154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 27474.5 Da PI: 10.4798 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 30.8 | 5.9e-10 | 234 | 254 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 D+++WrKYGqK++kgs +pr PGSC0003DMP400051154 234 ADEFSWRKYGQKPIKGSAYPR 254 69******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.1E-13 | 185 | 231 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 7.7E-9 | 221 | 254 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.13 | 228 | 254 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-7 | 231 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-5 | 235 | 254 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAVVSKMTEN FAVQEAASAG LKSMEHLIRL VSHEPVQVDC REIADFTVSK FKKVISILDR 60 TGHARFRRGP VQAPVPVYPD SFTTLSLAPS LSFAPAKETP AVQLQTALTL DFTKPSVERP 120 IGNSSAFTAF AVKSKEVLMA TPTPTNSSSF MSSITGEATV SNGKQASSSM LLLPAQAGNL 180 PITGKRCREH EQSDDISGSK STGSGKCHCK KRKSRDKKVM RIAAISSRIA DIPADEFSWR 240 KYGQKPIKGS AYPR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400051154 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014501 | 0.0 | BT014501.1 Lycopersicon esculentum clone 133872F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342466.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-66 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | M1CVB8 | 0.0 | M1CVB8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400075531 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 6e-60 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400051154 |