PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400050864

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 294aa MW: 33464.1 Da PI: 5.8384

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400050864	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.5	1.3e-23	112	173	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ +s++pr+Y+rCt++ +C++ k+v++ +++p+ + +tY g+H+++ PGSC0003DMP400050864 112 VDDGHAWRKYGQKQILNSTYPRHYFRCTHKydqKCQASKQVQKIQDNPQRFRTTYYGHHTCK 173 59*************************99999************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-24	98	173	IPR003657	WRKY domain
PROSITE profile	PS50811	20.002	107	175	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-24	109	173	IPR003657	WRKY domain
SMART	SM00774	1.1E-33	112	174	IPR003657	WRKY domain
Pfam	PF03106	3.0E-22	113	173	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDNSSTDLNR AIEGLIRGRE FTRRLKEIIK KPLVVGGEVA NIMAEELVAK IMESFSETLS 60 VINNSDVIIT TPVEVKSPED YSSGSCKSSD RRGCYKRRKT SESNIKESSD LVDDGHAWRK 120 YGQKQILNST YPRHYFRCTH KYDQKCQASK QVQKIQDNPQ RFRTTYYGHH TCKAFPRVSQ 180 IILDSPMDGN SNYISFDQNH TFPSIKQETK EEVVFGFYPK IEDQIQSSSS DYFLPNDHDH 240 DHLTPATFEA SGSRMTSPDV MSSGVYSSCT TTSNDNLEID IDFEEGLWNF DQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-23	112	173	8	69	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250\|UniProtKB:Q9LY00, ECO:0000250\|UniProtKB:Q9SUP6, ECO:0000269\|PubMed:21898085}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400050864

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269\|PubMed:21898085}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU056918	0.0	EU056918.1 Solanum tuberosum WRKY transcription factor 6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275414.1	0.0	WRKY transcription factor 6
Swissprot	K4BIZ9	7e-46	WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBL	M1CUN1	0.0	M1CUN1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400075091	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4230	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	9e-38	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400050864

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]