PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050863
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 203aa    MW: 23569.9 Da    PI: 6.0205
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050863genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.46.8e-242182159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                          +dDg++WrKYGqK++ +s++pr+Y+rCt++   +C++ k+v++ +++p+ + +tY g+H+++
  PGSC0003DMP400050863 21 VDDGHAWRKYGQKQILNSTYPRHYFRCTHKydqKCQASKQVQKIQDNPQRFRTTYYGHHTCK 82
                          59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-241282IPR003657WRKY domain
PROSITE profilePS5081120.0021684IPR003657WRKY domain
SuperFamilySSF1182904.71E-241882IPR003657WRKY domain
SMARTSM007741.1E-332183IPR003657WRKY domain
PfamPF031061.5E-222282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MFWKIYRKTS ESNIKESSDL VDDGHAWRKY GQKQILNSTY PRHYFRCTHK YDQKCQASKQ  60
VQKIQDNPQR FRTTYYGHHT CKAFPRVSQI ILDSPMDGNS NYISFDQNHT FPSIKQETKE  120
EVVFGFYPKI EDQIQSSSSD YFLPNDHDHD HLTPATFEAS GSRMTSPDVM SSGVYSSCTT  180
TSNDNLEIDI DFEEGLWNFD QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-242182869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050863
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569180.0EU056918.1 Solanum tuberosum WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275414.11e-147WRKY transcription factor 6
TrEMBLM1CUN01e-151M1CUN0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000750911e-147(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-26WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]