PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050747
Common NameLOC102599212
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 363aa    MW: 40575.3 Da    PI: 6.4046
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050747genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.2e-18255289135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  PGSC0003DMP400050747 255 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 289
                           99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-7814344IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.677249285IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16249299IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14249286IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.71E-15250313No hitNo description
CDDcd002021.45E-14254301No hitNo description
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
PfamPF003207.5E-16255289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
METPELFQTG YYNTEFTSEK QLISDVKNGE HFVVDDLLDL PNDDGMVTED TLDLTVIGNS  60
TDCSVVDNSC NSSLSGSNHP PQLLGYRDFP DGHLSTEFAV PYEDMAELEW LSNFVEESFS  120
SNELHKMQMV QAMRNRTDSE IHQFIPDPNR ASATSSTIFK PEMPVPAKAR SKRSRMAPGN  180
WASRLLVVSP NTTTPDSSMD TISMQDMSSS SESGMIIPSS GKKTVKSSST PKKKESNIHH  240
VPSNNNGSNS EGRKCLHCAT DKTPQWRTGP LGPKTLCNAC GVRYKSGRLV PEYRPAASPT  300
FMLTKHSNSH RKVLEIRRQK EVTQVEHQHQ HQFLPHNMMF DVSNADDYLI HQHMGPDFRQ  360
LI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359773.10.0PREDICTED: GATA transcription factor 12
TrEMBLM1CUD60.0M1CUD6_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000749350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-70GATA transcription factor 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]