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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400050744 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
HD-ZIP |
| Protein Properties |
Length: 529aa MW: 58180.4 Da PI: 7.4384 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400050744 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.9e-19 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+++Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
PGSC0003DMP400050744 17 KYVRYTPEQVDALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
5678*****************************************************97 PP
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| 2 | START | 178.4 | 4.3e-56 | 162 | 370 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88
laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++l+v s+g
PGSC0003DMP400050744 162 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGng 249
7899******************************************************.8888888888******************** PP
EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
g+++l +++l+a+++l+p Rdf+ Ry+ +++g++vi+++S++++q+ p+ +s+vRa lpSg+li+p+++g+s +++v+h+dl+
PGSC0003DMP400050744 250 GTIELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLE 338
*************************************************9998899********************************* PP
SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
START 174 grlphwllrslvksglaegaktwvatlqrqce 205
++++++lr+l++s++ ++t++a+l+++++
PGSC0003DMP400050744 339 PWSVPEVLRPLYESSTLLSQRTTMAALRHLRQ 370
***************************99876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 529 aa
Download sequence Send
to blast |
MAVTSSCKDK FGMDSGKYVR YTPEQVDALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK 60
QIKVWFQNRR CREKQRKESS RLQGVNRKLT AMNKLLMEEN DRLQKQVSQL VYENSFFRQQ 120
TQTAALATTD NNSCESVVTS GQHNLTPQRP PRDASPAGLL SLAEETLTEF LSKATGTAVE 180
WVQMPGMKPG PDSIGIIAIS HGCSGVASRA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV 240
LNVMSTGNGG TIELLYMQLY APTTLAPARD FWLMRYTSVM EDGSLVICER SLNNTQNGPS 300
MPPVQSFVRA DILPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLSQRT 360
TMAALRHLRQ ISQEISHPTV SGWGRRPAAL RALGQRLSKG FNEAVNGFTD EGWSMLESDG 420
IDDVTILVNS SPSKLMGANL SYANGFPSMS SAVLCAKASM LLQNVPPAIL LRFLREHRSE 480
WADSGIDAYS AAAVKAGPCS IPVTRTGSFG GQIILPLAHT IEHEEASD*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
Planta, 2014. 239(5): p. 989-1001
[PMID:24488524] - Baima S, et al.
Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
Mol Plant, 2014. 7(6): p. 1006-1025
[PMID:24777988] - Kakehi J, et al.
Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
PLoS ONE, 2015. 10(1): p. e0117309
[PMID:25625317] - Jia X, et al.
Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
Plant Sci., 2015. 233: p. 11-21
[PMID:25711809] - Liu S, et al.
Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
Front Plant Sci, 2015. 6: p. 388
[PMID:26082787] - Yamaguchi YL, et al.
Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
Front Plant Sci, 2017. 8: p. 1195
[PMID:28747918] - Yamazaki K, et al.
Suppression of DELLA signaling induces procambial cell formation in culture.
Plant J., 2018. 94(1): p. 48-59
[PMID:29383774]
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