PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050196
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 409aa    MW: 45120.2 Da    PI: 5.0799
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050196genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-06444539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          +C+ ++e++ + +C+++  +lC +C  + H+       H++
  PGSC0003DMP400050196  4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                          7*****************************65777777776 PP
2zf-B_box26.31.5e-084689440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                           +C++++++++   C + ++ lC++C  ++H +       H+++
  PGSC0003DMP400050196 46 LICERCNSQPAVVRCVEERTSLCQNCDWSGHASsssgssmHKRQ 89
                          68*****************************7778888888875 PP
3CCT583.3e-20352394143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrF k+
  PGSC0003DMP400050196 352 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFIKA 394
                           899*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000212.80E-7447No hitNo description
SMARTSM003364.4E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0154391IPR000315B-box-type zinc finger
CDDcd000211.28E-44773No hitNo description
SMARTSM003360.724891IPR000315B-box-type zinc finger
PROSITE profilePS5101714.922352394IPR010402CCT domain
PfamPF062035.5E-15352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC  60
VEERTSLCQN CDWSGHASSS SGSSMHKRQA LSCYTGCPSA AELSNIWSFL LDDPSIGDTC  120
EQRMGSMSIN DNRPRDGQDT QGKDNSQNVC AAVEVNDMNI SEKSNLLVES SMPTFDNKLH  180
NVEPPIGSSS KGCYMGAKGS SLIEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE  240
NENLDSFFGM KDIKGADYSY RGVNAAEGSS NWRVNTVQPT CSDAASADSM MSCKTDSILY  300
FARQSSLSVS NQTGGECSAG DHQDCGVSPM LLMGEPPWCP PCTEISSTST SRSNAVLRYK  360
EKKKTRKFDK RVRYVSRKAR ADVRRRVKGR FIKAGDAYDY DPLPTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251549.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_010313684.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-131COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM1CT820.0M1CT82_SOLTU; B-box zinc finger protein 8
STRINGPGSC0003DMT4000741430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-97CONSTANS-like 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]