 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400049939 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NAC |
| Protein Properties |
Length: 543aa MW: 60233.8 Da PI: 4.6211 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400049939 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 155 | 3.3e-48 | 4 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87
lppGfrFhPtd el+++yLk+k++gkk+++ evi+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat+sgyWk+tg
PGSC0003DMP400049939 4 LPPGFRFHPTDVELIMYYLKRKITGKKFHF-EVITELNIYKFSPWDLPdKcCYKSKDLEWYFFCPRERKYASGGRMNRATDSGYWKTTG 91
79***************************9.99***************6545666777******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
kd+ v+ +++ vg ktLvf+ g+ p+g++tdW++hey++
PGSC0003DMP400049939 92 KDRYVTY-DEKIVGSVKTLVFHLGHPPRGQRTDWLIHEYKF 131
*******.999****************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 543 aa
Download sequence Send
to blast |
MARLPPGFRF HPTDVELIMY YLKRKITGKK FHFEVITELN IYKFSPWDLP DKCCYKSKDL 60
EWYFFCPRER KYASGGRMNR ATDSGYWKTT GKDRYVTYDE KIVGSVKTLV FHLGHPPRGQ 120
RTDWLIHEYK FEDKESIDAG FAQDSYVLYK VFQKSGPGPK NGAQYGAPFK EEDWEDDKIP 180
AEPCTSDVFP APPGRPDKPS TSNATRVVDP GSTSVWPSSE LSPSPIQPSV QKLPLDEPDD 240
EELPGEPKLS NVSSINWMPS DQLKAKSSNI FSALPILPEK QSCSVDTSLA NPGPGPSNDQ 300
MCTNEMAPDE LDDEMIGLFT QFTEDTSLLS GGNETNQKLE NFHQDVNAPS AAFTDGNDIF 360
DDLGDIEVWA RVGQLEPDLT ASGGANYSLN PVILPQDAAY MELNDLDIPL NHPAETIGTG 420
QLVPGHFCTP YNSNIGMQQL CFGSNSLGIV QDFGEHRLPT LPESYTQQVN HPDMVKPCSS 480
FLCGMELFFS LVSHPEGLLE TASLPPRGSG KVCVLLTLPR PHLVGFHWVV VVVVVVSHIF 540
TN*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-43 | 4 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-43 | 4 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-43 | 4 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-43 | 4 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-43 | 4 | 160 | 20 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 3e-43 | 4 | 160 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 3e-43 | 4 | 160 | 17 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT013683 | 0.0 | BT013683.1 Lycopersicon esculentum clone 132505F, mRNA sequence. |
