PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049656
Common NameLOC102580885
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 361aa    MW: 39794.5 Da    PI: 8.2726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049656genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30171230159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK+ +++++pr+Y+rC++a gCpvkkkv+rs ed+++v+ tYegeHnh+
  PGSC0003DMP400049656 171 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApGCPVKKKVQRSIEDQSIVVATYEGEHNHP 230
                           58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29163231IPR003657WRKY domain
PROSITE profilePS5081126.418166232IPR003657WRKY domain
SuperFamilySSF1182906.28E-26168231IPR003657WRKY domain
SMARTSM007745.5E-36171231IPR003657WRKY domain
PfamPF031064.9E-25172230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRLRPV LEKVPKQEVQ SDFTGLSRER ENMGVKNEAG DLLEELNRVS  60
SENKKLTEML TVVCENYNAL RNQMMEYMST QNGVAEDSSA GSRKRKAESI SNISNPVNNN  120
NNNMDVVHGR SSESSSSDEE SCCKKLREEH IKAKVTIVSM KTDASDTSLI VKDGYQWRKY  180
GQKVTRDNPC PRAYFRCSFA PGCPVKKKVQ RSIEDQSIVV ATYEGEHNHP QTSKPELGAS  240
TNTSTASRLN VTTIAGTTTS VPCSTTLNSS GPTITLDLTA PKTIEKRDMK MNHSTTSPIG  300
ANSIRTTTTT GGEYQNRPEF QQFLIEQMAT SLTKDPSFKA ALAAAISGKI LQHNNQTGRW  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201702291371WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542650.0FJ654265.1 Solanum lycopersicum WRKY transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356251.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLM1CRY80.0M1CRY8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000733960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-85WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]