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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400049367 |
| Common Name | LOC102603056 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
WRKY |
| Protein Properties |
Length: 327aa MW: 35282.5 Da PI: 5.2465 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400049367 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 102.5 | 2.3e-32 | 177 | 234 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ed ++v++tYeg+H h+
PGSC0003DMP400049367 177 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDSSIVITTYEGQHCHH 234
8******************************************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MDENDKQVDN DPLPSGTTGG AAAAVFTGAA SESSWSLGGG DDESDNVYFF GTSSTDRESS 60
ILTEFGWNFQ PDGNRDVRAG GDGSRFHRID EDLAGNSTTT ASASASVTEP TVTEKITDEP 120
VSSSCSDDPP EKSTASGSSS ASRPPSDTAS KVKKKGQKRI RQPRFAFMTK SEVDHLEDGY 180
RWRKYGQKAV KNSPFPRSYY RCTNTKCTVK KRVERSSEDS SIVITTYEGQ HCHHTVGFPR 240
GGLINHEAFT SQLTPLPSQF YHPSGVQYPH ELVPMSSPAA PESHTMPGET GPEPIRLPET 300
SQPDATQQPT DEGLLGDIVP PGMRSR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT013933 | 0.0 | BT013933.1 Lycopersicon esculentum clone 132931F, mRNA sequence. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Jiang Y,Qiu Y,Hu Y,Yu D
Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
Front Plant Sci, 2016. 7: p. 145
[PMID:26904091] - Jiang Y,Yu D
The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
Plant Physiol., 2016. 171(4): p. 2771-82
[PMID:27268959] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615]
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