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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400049275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 105aa MW: 11966.5 Da PI: 10.6586 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.8 | 1.2e-19 | 9 | 48 | 20 | 59 |
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 f rsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+ PGSC0003DMP400049275 9 FRRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 48 57*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 9.02E-16 | 9 | 50 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-19 | 9 | 50 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-12 | 9 | 49 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-14 | 9 | 48 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.146 | 11 | 50 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MIFTRLVIFR RSYYKCTSQG CNVRKHVERA ASDPKAVITT YEGKHNHDVP AARNSSHNTA 60 NNSMSQLRPH NPVVDKPAAM RRADFQRNEQ QPIALLRFKE EQST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 9 | 51 | 36 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 9 | 51 | 36 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400049275 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-155 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305484.1 | 2e-61 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9ZQ70 | 1e-27 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | M1CR17 | 1e-72 | M1CR17_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400072836 | 4e-61 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 4e-30 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400049275 |
Publications ? help Back to Top | |||
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