PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049273
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 416aa    MW: 44942.4 Da    PI: 6.3768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049273genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47e-34216272259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  PGSC0003DMP400049273 216 DDGYNWRKYGQKQVKGSEYPRSYYKCTNPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 272
                           8****************************************.***************8 PP
2WRKY34.83.4e-11394415122
                           ---SS-EEEEEEE--TT-SS-E CS
                  WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                           ldDgy+WrKYGqK+vkg+++pr
  PGSC0003DMP400049273 394 LDDGYRWRKYGQKVVKGNPYPR 415
                           59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.26210274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-30210274IPR003657WRKY domain
SuperFamilySSF1182902.22E-26213274IPR003657WRKY domain
SMARTSM007747.5E-38215273IPR003657WRKY domain
PfamPF031068.1E-26216272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-13380415IPR003657WRKY domain
SuperFamilySSF1182901.57E-9386415IPR003657WRKY domain
PROSITE profilePS5081116.421389415IPR003657WRKY domain
PfamPF031065.7E-7395415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAENEGSSSS STSRGQLLRP TITLPPRSSI ESLFSGGSSG ISPGPMTLVS SFFSDNDPDS  60
ECRSFSQLLA GAMTPPAGFT GGRPGFPPLP QPSTAAITQS PTTFTVPPGL SPTSLFDGFF  120
SPGQGPFGMS HQQVLAQLTS QASQVQSQMH IQPNYPSSAT AAAPSMSQFQ SLPSNAAANR  180
QIPPTLDPNI VKESSDVSLS DQRSEPASFA VDKPADDGYN WRKYGQKQVK GSEYPRSYYK  240
CTNPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KECGNPNGNY NLQGPYELSS  300
EGLTGNFNKP KEGEPSYSLR MKDQESSQVN DQTSGSSDSE EVGNAETRVD GRDIDERESK  360
RRAVEVQSTE AACSHRTVAE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-182152741474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049273
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111250.0AB711125.1 Solanum tuberosum StWRKY12 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239088.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-126WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM1CR150.0M1CR15_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000728360.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-114WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]