PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049243
Common NameLOC102602723
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 530aa    MW: 59441.1 Da    PI: 6.8442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049243genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001992113223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           +C+ Cgk+F +   L  H+ +H
  PGSC0003DMP400049243  92 VCQQCGKVFQSMKALCGHMASH 113
                           6******************999 PP
2zf-C2H212.60.00041464486123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp C+++F++   L  H r+H
  PGSC0003DMP400049243 464 HECPFCDRVFKSGQALGGHKRSH 486
                           78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-7931No hitNo description
PROSITE profilePS5015710.616936IPR007087Zinc finger, C2H2
SMARTSM003550.35931IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-4931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-786113No hitNo description
SMARTSM003550.02591113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.43291118IPR007087Zinc finger, C2H2
PfamPF139122.1E-792115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576675.81E-7386410No hitNo description
PROSITE profilePS501579.515388415IPR007087Zinc finger, C2H2
SMARTSM003556.2388410IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-8388412IPR007087Zinc finger, C2H2
PROSITE patternPS000280390410IPR007087Zinc finger, C2H2
SuperFamilySSF576675.81E-7459486No hitNo description
PfamPF139121.5E-10463486IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432464486IPR007087Zinc finger, C2H2
SMARTSM003550.014464486IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280466486IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEDDQDLKFV CKLCDKKFLC GKSLGGHMRS HVVEENGEGN AEKFESWGSR ENPHQSKFDV  60
GGHSGYGLRE NPKKTWRAVD STFSPLPPQE RVCQQCGKVF QSMKALCGHM ASHSEKLVMD  120
SHSDTETDDD VEEEEETKMK TRSLKTKRYK RLVVKSSNYC LVNNNNSVVN YGSSSVSEID  180
ELDQEEVVAK CLMMLSRDTG NWNGVNSVVE SSDNNSVVLE TKSSSTDMKF GRKDRLKCVY  240
NQNETPGTKK LSGLDVDQAE SESSDSGYFL DDNTIVESDI SVDGFHRNGN SKWSTSQMSH  300
AVWCDESGVD KGKGLNRTKK YPTESRKDLT VECEYDDYAI ASYMEKCEPR KRMKDSSYHP  360
ELGNKSVKKI KISPKSSEGC NTIQKKKYEC LNCKKSFNSY QALGGHRPCH KKANAYLESI  420
NGTGESSVDD KNRETFSSRT PASTAKDLSY NPEKTIKPKK SQRHECPFCD RVFKSGQALG  480
GHKRSHFIVG TEQNMNRSSA VKKVDDLLDL NLPAPLDDDD DEHAHLVSW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2250400.0AC225040.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0079C22, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348710.10.0PREDICTED: uncharacterized protein LOC102602723
TrEMBLM1CQY50.0M1CQY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000727960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-36C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]