PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21285.8 Da PI: 7.7145 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 101.8 | 3.8e-32 | 30 | 135 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk+ ae++ + + e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F PGSC0003DMP400048918 30 FEKPLTPSDVGKLNRLVIPKQNAEKYfplndsiNDSGEKGFLLSFEDELGKLWKFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDVVLF 118 99****************************99944556899************************************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ ++ + +++++rk PGSC0003DMP400048918 119 ERHRVDGDRQFIGWRRK 135 *8777888899**9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-39 | 24 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-31 | 25 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.23E-27 | 28 | 125 | No hit | No description |
Pfam | PF02362 | 5.2E-29 | 30 | 136 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.987 | 30 | 135 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-24 | 30 | 136 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEESSRNSSS PPKQNSNQLE EIEIPKEHLF EKPLTPSDVG KLNRLVIPKQ NAEKYFPLND 60 SINDSGEKGF LLSFEDELGK LWKFRYSYWN SSQSYVLTKG WSRFVKEKKL DAGDVVLFER 120 HRVDGDRQFI GWRRKNGDAV AAAAATTVAP PGGGGGWGQV HPFPSAGVPY QTDFLHAGCV 180 FFFNTYLSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-48 | 26 | 135 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-48 | 26 | 135 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048918 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ197979 | 0.0 | HQ197979.1 Solanum tuberosum clone BAC BC163l15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339143.2 | 1e-130 | PREDICTED: B3 domain-containing protein At2g36080 | ||||
Swissprot | Q9FNI3 | 2e-57 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | M1CQ50 | 1e-138 | M1CQ50_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400072354 | 1e-129 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 7e-58 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048918 |
Publications ? help Back to Top | |||
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