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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048896 | ||||||||
Common Name | LOC102587642 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YA | ||||||||
Protein Properties | Length: 197aa MW: 22062.8 Da PI: 10.0614 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 79.9 | 4.3e-25 | 50 | 105 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p++VNaKQy++Il+RR+ Rak e+ +l k rkp+lh SRh hA+ RpRg gGrF PGSC0003DMP400048896 50 ESPIFVNAKQYHGILRRRKFRAKEMEK-NL-LKPRKPFLHLSRHLHAKSRPRGGGGRF 105 58********************97764.45.6*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.3E-26 | 48 | 108 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 28.679 | 49 | 108 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.9E-21 | 52 | 105 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.7E-19 | 52 | 74 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.7E-19 | 82 | 105 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEQPMSSDSH ESGVSMQSYN MDYQGHFDLG LFGQSLGRIM LPLNLTSHDE SPIFVNAKQY 60 HGILRRRKFR AKEMEKNLLK PRKPFLHLSR HLHAKSRPRG GGGRFLNTRK TNGSINDDAN 120 GTTKTSNKKC HHTISQNSEV LQSDVFNFNS TKETTNNMSS IEAFLDTTNT GHDILMASKW 180 GSAAAVDSYC CRNLKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-14 | 50 | 118 | 2 | 71 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 1e-14 | 50 | 108 | 2 | 62 | HAPB protein |
4g92_A | 1e-14 | 50 | 108 | 2 | 62 | HAPB protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048896 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-143 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339173.1 | 1e-147 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
Refseq | XP_015165468.1 | 1e-147 | PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 | ||||
TrEMBL | M1CQ29 | 1e-145 | M1CQ29_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400072322 | 1e-146 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3706 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 6e-34 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048896 |
Entrez Gene | 102587642 |
Publications ? help Back to Top | |||
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