PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ARF | ||||||||
Protein Properties | Length: 362aa MW: 40053.6 Da PI: 7.9897 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.4e-24 | 110 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsd+++ g +++p+ +a+++ +++ + l+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+ vF PGSC0003DMP400048339 110 FVKILTPSDANNGGGFSVPRFCADSIfprlnfeAEPPVQ--NLSIRDIKGGVWEFRHIYRGTPRRHLLTTGWSKFVNSKQLVAGDSAVF 196 89*********************999*****86555555..7*********************************************** PP EE-SS.SEE..EEEEE-S CS B3 83 kldgr.sefelvvkvfrk 99 ++ r + +l+v+v+r+ PGSC0003DMP400048339 197 MR--RtANDQLYVGVRRA 212 *4..4477779****996 PP | |||||||
2 | Auxin_resp | 84.6 | 2e-28 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 +a+ a+ + +Fev nPr +++Fvvk++ ve al+++++vG+R+kma+etedss++ + +Gtv++v +++ W++S+Wr+L+ PGSC0003DMP400048339 257 VAEMAARGVPFEVSCNPRDDWADFVVKAQAVEMALNIPWTVGTRVKMAVETEDSSRTACfQGTVSSVILTESGPWRGSPWRMLQ 340 5788999***************************************************99**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-32 | 101 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.72E-29 | 104 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.66E-20 | 109 | 211 | No hit | No description |
Pfam | PF02362 | 7.4E-22 | 110 | 212 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-18 | 110 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.379 | 110 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.6E-26 | 258 | 340 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MQAPTASDRE VDPIVWRAIA GKSVQIPPVG SRVYYFPQGH AEHATFTSPG VLSPGIPAFI 60 LCRVLSVRFL AESDTDEAFA KIFLHPISPS EVDEVTVSEE EEVEDKIVSF VKILTPSDAN 120 NGGGFSVPRF CADSIFPRLN FEAEPPVQNL SIRDIKGGVW EFRHIYRGTP RRHLLTTGWS 180 KFVNSKQLVA GDSAVFMRRT ANDQLYVGVR RAIKRNDNSQ KWTSSFLMRE HINSGGSPDV 240 SWGIRKGRMT MEAVAAVAEM AARGVPFEVS CNPRDDWADF VVKAQAVEMA LNIPWTVGTR 300 VKMAVETEDS SRTACFQGTV SSVILTESGP WRGSPWRMLQ DRQVRVATEL VVGQRTALKQ 360 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-59 | 15 | 340 | 55 | 367 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048339 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364958.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Swissprot | Q84WU6 | 1e-113 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | M1CNT2 | 0.0 | M1CNT2_SOLTU; Auxin response factor | ||||
STRING | PGSC0003DMT400071449 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-108 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048339 |