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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048336 | ||||||||
Common Name | LOC107058473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28642.8 Da PI: 8.315 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.4e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+k L H++ H PGSC0003DMP400048336 59 FSCNFCKKEFSTKQALGGHQNGH 81 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-5 | 44 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.39E-6 | 56 | 86 | No hit | No description |
PROSITE profile | PS50157 | 11.365 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDAFAMKKSC SSKASSISSA SEESHEVITN TKKMKEKSME DTQLKTHEQI RHSSKTKIFS 60 CNFCKKEFST KQALGGHQNG HKQERALSKR QKKLVGVVQP FEHPNYHPYY SPYSKLNSHM 120 SFHSSFTNQS PFGVNGDSYV IHKPTFYQTW SCFSRYNYRF NPVKWPSSSS FFSTKNLLGN 180 NNSDMIGTRV DALENSLNSE SKNSVEGLNL KDSQVNIDGN LGGNSYMQMK LEDGDAEKNN 240 EEEEELDLDL KL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048336 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159700.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | M1CNS9 | 0.0 | M1CNS9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400071440 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3967 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 7e-17 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048336 |
Entrez Gene | 107058473 |
Publications ? help Back to Top | |||
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