PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048204
Common NameLOC102578348
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 178aa    MW: 19805.3 Da    PI: 6.746
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048204genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.31.9e-41111101100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +CaaCk+l+r+C++ C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+rdPvyG++g i +lq+++ +
  PGSC0003DMP400048204  11 SCAACKFLKRRCTTTCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVE 99 
                           6**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                           l+++l ++k++
  PGSC0003DMP400048204 100 LQHDLMVTKAH 110
                           ****9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.11410111IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-4111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKSNEPRSSS SCAACKFLKR RCTTTCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP  60
QDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMVTKAH LAYYEAKPSS  120
TTSNCSLLDY DPLNVNIINT PSFFADTSGG FLDSFSQNTF AMDQTGSNNE FGQFPFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4561146114LOB family transfactor Ramosa2.1
5ly0_B6e-4561146114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356469.11e-131PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL82e-57LBD21_ARATH; LOB domain-containing protein 21
TrEMBLM1CNG61e-130M1CNG6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000712811e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.18e-60LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]