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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 28137.4 Da PI: 9.1191 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.5 | 5.5e-33 | 109 | 167 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg H+h+ PGSC0003DMP400047290 109 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTSSCGVKKRVERSIQDTSIVVTTYEGVHTHP 167 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 94 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-29 | 101 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.446 | 104 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-38 | 109 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 110 | 167 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MFGVDEHQDC YNTTTSSIFD LLMFPSQQQR FITCSSLPES SSILSDHLIS NVVPVIPNLS 60 SISSSSTELP AHEDHQHKYK KQLKPNKKKQ KGKKEPRFAF MTKSEVDHLD DGFRWRKYGQ 120 KAVKNSPFPR SYYRCTTSSC GVKKRVERSI QDTSIVVTTY EGVHTHPCPL TPRGWVGVQP 180 VTTTYGGRVG GGDSGGRSHY GDYSSSLFST NNSLQEKRFW NSSNSSLAKD DHGLLQDMVS 240 SRMRSDLIEE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 99 | 169 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 99 | 169 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 191 | GGRVGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047290 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-173 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-173 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355755.1 | 0.0 | PREDICTED: probable WRKY transcription factor 48 isoform X2 | ||||
Swissprot | O22900 | 2e-46 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | M1CLH8 | 0.0 | M1CLH8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069966 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 9e-45 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047290 |
Publications ? help Back to Top | |||
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