PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047182
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 1072aa    MW: 119049 Da    PI: 8.553
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047182genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.32.6e-39149226178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqv++C+adls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  PGSC0003DMP400047182 149 VCQVQDCRADLSCAKDYHRRHKVCEVHSKAAKALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTHP 226
                           6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-31144211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.77147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.23E-36148229IPR004333Transcription factor, SBP-box
PfamPF031102.2E-28150223IPR004333Transcription factor, SBP-box
SuperFamilySSF484035.28E-5747887IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-5812890IPR020683Ankyrin repeat-containing domain
CDDcd002042.71E-4813952No hitNo description
SuperFamilySSF484035.28E-5923954IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-5928970IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1072 aa     Download sequence    Send to blast
MEARNFHGPV VSNMEVGGKK SREWDSNDWV WDGDRFTAEP LNSLPSDCRS KQLFPIGSEI  60
PETATGIFNG FSSGAGELTL GNDKGRKELE KRRRTIVIDD DDEQNGEAGS LNLKLGEQLY  120
PVMEGEVEKW EGKNGKKTKI SGVSSNRAVC QVQDCRADLS CAKDYHRRHK VCEVHSKAAK  180
ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPENVA NGASVTDEGG  240
SHYLLISLLR ILANVQFNSS EQTKDQDLLA HLLRNLASVA GAANERNTSS LLPAPLDLQN  300
TGTSMEAPKE DSLRSNRNCL TIPASEVTEK RMDTGTSDAE RGISQNPRAS QPETMCCRKE  360
SLRINANAPV TTSAPLKLNI DLNNIYDDSQ GGIQKLQNSG AFANPGAASS DRPLWISHDP  420
HKSNSTRTSW NSGSTSSLSP SSSSGEAQAS VMVVLNYALN SRFSTSTKYG KIDPNQDSVL  480
PRNMSRTDRI VFKLFGKDPG EIPTGLRKQV LDWLSHSPTD IESYIRPGCI VLTIYLRMDK  540
PIWEELYCDL NSSLRKLLNA SAGSFWRTGW VYSRVKDRVA FLFNGQVVLD TPLPSHRSCG  600
ISIIKPIAVC ASERVQFLVK GFNLSRPTTR LLCAMEGKYL VQGNCTDMVV GADSCMDHNE  660
IQSLSFPCTV PNATGRGFIE VEDHGLSSNF FPFIVAEKEV CSEIRTLESI IEDAKMADGF  720
LRGTEEFQAR DQALDFLHEL GWLLHRSHLK FRVGSGASLN LFPFQRFHRL IDFSIDHDWC  780
AVVKKLLDVF FNGVVDVGIQ SSLDVPLQEV GILHRAVRRK CRSMVDVLLK YRHHGAFHKS  840
GLQKQEDDRG YLFRPDAVGP GGLTPLHIVA SLAGYENILD ALIDDPGQAI TSLPMARGEA  900
TLHRLLALWR RSSKGDKKRE VGIEAWKSAR DSTGLTPNDY ACLRCHYSYV HMVQKKINQK  960
PGDGHVVLDI PGSLLDSNLK QKLSDGHRSV KVTSFQTEKS LGKPIHRQCK QCKQKLSYGN  1020
SGTSLVYKPA MLSMVAIAAI CVCVALLFKS SPEVLYSFRP FRWELLKYGS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29141223284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355718.10.0PREDICTED: squamosa promoter-binding-like protein 1
TrEMBLM1CL800.0M1CL80_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000698260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]