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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045447 | ||||||||
Common Name | LOC102604010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 428aa MW: 48270.8 Da PI: 5.1556 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 306.1 | 8.3e-94 | 37 | 416 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsev 87 l++lLl+cA a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++ + s+ + + +++++l ++++ PGSC0003DMP400045447 37 LEKLLLHCASALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPNATNLHGGSNLE----RRLMSVTELagYVDL 121 5799***************************************************777766655444444....33333444466**** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelg 173 P+++f++ + N+ I++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + + ++ + + ee+g+rLa+fA+ + PGSC0003DMP400045447 122 IPWHRFGFCASNSVIYKAIEGQTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPQVpplLNVSSEEVGQRLANFAKFRD 210 **********************************************************988755558899999**************** PP GRAS 174 vpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadh.nsesFle 255 vpfef+v+ + l++l++++L+++ +Eal+Vn++ l +l+d+++ rd +L+ vk+l+P +v++v++++d+ ns+++ PGSC0003DMP400045447 211 VPFEFHVIedlnYDMFLSQLNPSTLQIRDDEALVVNCQNWLRYLHDDEQIKGAisSRDIFLDRVKDLNPCIVTIVDEDCDLgNSTTLTS 299 *******9766444467889*******************99999876643332447********************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 r++ +++y + fd+le+ lp++s++r +E +g +i+n++ eg++r+er e+ +k ++r+e++G+ +vp+se++ k++k+ll ++ PGSC0003DMP400045447 300 RIATCFNYLWIPFDALETFLPKDSKQRLDYEGD-IGHKIENIIGFEGNQRIERLESCNKFSQRMENSGYMSVPFSEETIKEVKSLLDEH 387 *********************************.******************************************************* PP GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++g++ +ee++ lvl+Wk+++ v +++W PGSC0003DMP400045447 388 AsGWGMK-KEEHDMLVLTWKGHNSVYATSW 416 *666555.45677899******99999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.97 | 11 | 397 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-91 | 37 | 416 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MNFTTIPLQN PSFFNNSQSS LAGALQGCIG NLDGACLEKL LLHCASALEN NDVTLAQQVM 60 WVLNNLASSN GDPNQRLTSW FLRALISRAS RVCPNATNLH GGSNLERRLM SVTELAGYVD 120 LIPWHRFGFC ASNSVIYKAI EGQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV 180 PSWRPQVPPL LNVSSEEVGQ RLANFAKFRD VPFEFHVIED LNYDMFLSQL NPSTLQIRDD 240 EALVVNCQNW LRYLHDDEQI KGAISSRDIF LDRVKDLNPC IVTIVDEDCD LGNSTTLTSR 300 IATCFNYLWI PFDALETFLP KDSKQRLDYE GDIGHKIENI IGFEGNQRIE RLESCNKFSQ 360 RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM LVLTWKGHNS VYATSWVIVP 420 TTPYGHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-57 | 38 | 416 | 88 | 472 | Protein SHORT-ROOT |
5b3h_B | 4e-58 | 38 | 416 | 34 | 418 | Protein SHORT-ROOT |
5b3h_E | 4e-58 | 38 | 416 | 34 | 418 | Protein SHORT-ROOT |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045447 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360550.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
TrEMBL | M1CH56 | 0.0 | M1CH56_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067360 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10303 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-122 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045447 |
Entrez Gene | 102604010 |
Publications ? help Back to Top | |||
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