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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400045166 |
Common Name | LOC102589769 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
ERF |
Protein Properties |
Length: 261aa MW: 29203.2 Da PI: 6.5977 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400045166 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57 | 4.9e-18 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g
PGSC0003DMP400045166 92 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 141
69****887.**********843...6**********************99876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MEDHNEFSIS SSTTTSSFTS CCSNNNCLSS TSTSSTSSNC FHESIAKTSP NDHYKCKSKK 60 SSKKIQDGNE EEDDNKKIRR KNEGVVDEKH PTYRGVRKRN WGKWVSEIRQ PRKKSRIWLG 120 TYPTAEMAAR AHDVAALAIK GDSAYLNFPH LADQLPRPAS TSPKDIQAAA AKAAAANIFL 180 EEKSQLTELH SSHSSTNLAS QELLNSPSMD HDDPFFDLPD LTIDRVDQND RYQYPISTWQ 240 LAGADSGMFR LDEPFLWECY *
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC233521 | 0.0 | AC233521.1 Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH165C24, complete sequence. |