PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 32229.3 Da PI: 6.7849

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400045076	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PGSC0003DMP400045076 126 RKKLRLSKEQAAVLEDTFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 180 788899***********************************************98 PP
2	HD-ZIP_I/II	128	3.9e-41	126	215	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE++F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr PGSC0003DMP400045076 126 RKKLRLSKEQAAVLEDTFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELR- 213 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l PGSC0003DMP400045076 214 AL 215 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	20	No hit	No description
Pfam	PF04618	6.8E-15	3	102	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	1.8E-18	121	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.184	122	182	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.0E-18	122	185	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-15	124	186	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-16	126	180	IPR001356	Homeobox domain
CDD	cd00086	3.70E-15	126	183	No hit	No description
PROSITE pattern	PS00027	0	157	180	IPR017970	Homeobox, conserved site
SMART	SM00340	3.1E-26	182	225	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.3E-11	182	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSGEKEDGLG LSLSLGIMSC PQNNHKIPPP FPLNLLPFMH HHQISSGRKD EGGERVRGGI 60 DMNEPARMII ECDDEEDEEE DQVLMVSSPN STVSSVSGKR SHDREENEGE RATSSLEDDG 120 GDAAARKKLR LSKEQAAVLE DTFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEY LKRCCENLTD ENRRLQKEVS ELRALKLSPQ LYMNMSPPTT LTMCPQCERV 240 AVSSSAASSS VTGANASRSH HHQAPVPLNK PWAAMFASKT LDVQRSQM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	182	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400045076

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By transition from light to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013613	0.0	BT013613.1 Lycopersicon esculentum clone 132414F, mRNA sequence.
GenBank	X91212	0.0	X91212.1 L.esculentum mRNA for HD-ZIP protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347941.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT3-like
Swissprot	P92953	2e-84	ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBL	M1CGA5	0.0	M1CGA5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066838	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1118	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-66	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400045076
Entrez Gene	102592333

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Gallemí M, et al. A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity. New Phytol., 2017. 216(3): p. 798-813 [PMID:28805249]