PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045048
Common NameLOC102583621
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 465aa    MW: 50748 Da    PI: 7.7757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045048genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15286331555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  PGSC0003DMP400045048 286 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 331
                           9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.57E-17278335No hitNo description
SuperFamilySSF474593.27E-19279348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18286340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-18287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNQCVPSWDL DDSTVPRKNP IQTQSNSLAA DVPSLNYEVA ELTWENGQLA MHGLGPPRAN  60
NKPISSYGGT LESIVNQATR CNDVPPHLHG KSTVDRNKNG GDEVVPWFNN HNAVAYAPPA  120
TGLVTMTKDA LVPCSRNTSN SDNHRSVHVP GIDGSTHVGS CSGATNSRDW MVAPRMRVRP  180
TKREWNSRTD MISVSGSETC GGDSRQLTVD TFDREFGTTM YTSTSMGSPE NTSSDKQCTN  240
RTGDDHDSVC HSRDEREAGD DEDDNNKKGS KNSSCFTKRK RAAAIHNQSE RKRRDKINQR  300
MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVHMMSRM NMSPAMMLPL AMQQQLQMSM  360
MGMGMGMGMG MGVAGVFDIN NLSRPNIPGL PSFLHPSAAT AAFMQPMTSW DNSSAAPPPP  420
PAMPDPLAAL LACQSQPINM DAYRRMAALY QQFQQPPTGS GPKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278293RKRAAAIHNQSERKRR
2289294ERKRRD
3290295RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045048
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347913.10.0PREDICTED: transcription factor UNE10
SwissprotQ8GZ381e-97UNE10_ARATH; Transcription factor UNE10
TrEMBLM1CG830.0M1CG83_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000668070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]