PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044698

Common Name

LOC102592894

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 296aa MW: 33889.1 Da PI: 9.9414

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044698	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8.4e-16	64	149	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k +++s+v+ +l+lp+ f++ h+ ++ ++t+tl des ++++ k+ ++++ l++GW++F +++L egD++vF+l + + PGSC0003DMP400044698 64 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCK 146 89*******************9997..56889************555555....9********************865333 PP E..EE CS B3 90 felvv 94 +v PGSC0003DMP400044698 147 L--KV 149 3..44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.5E-18	57	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-21	59	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.37E-22	62	153	No hit	No description
Pfam	PF02362	2.4E-13	64	152	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	64	155	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-17	64	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MKDRSLELKG WHKQVVCKKS KKRGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK 60 YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPVH 180 QRQHNISMKQ VGIKRQRLSS QEGDDYSTEN MLHKHSHSRN MFKNLDLPSK GLDYETLNIV 240 DAVKASKLSD PPNGTFSSWN TRPTQLEQLE IRPFSSGYSI EPALTLSGAE MVFRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044698

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-100	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-100	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346414.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_006346415.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
Refseq	XP_015163758.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
TrEMBL	M1CFC6	0.0	M1CFC6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066312	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13184	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-43	B3 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044698
Entrez Gene	102592894

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]