PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044188
Common NameLOC102588837
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 335aa    MW: 37380.7 Da    PI: 9.1903
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044188genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.9e-31254311359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers ++p+++ +tYegeHnh+
  PGSC0003DMP400044188 254 DDYSWRKYGQKPIKGSPHPRAYYKCSSVrGCPARKHVERSLDEPTMLMVTYEGEHNHS 311
                           99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.4E-18205250IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-32240311IPR003657WRKY domain
PROSITE profilePS5081129.953247313IPR003657WRKY domain
SuperFamilySSF1182901.07E-26249311IPR003657WRKY domain
SMARTSM007741.4E-37252312IPR003657WRKY domain
PfamPF031061.7E-26254310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVELMMNYI NTPSNTNNSF TRNLEEKAVI QEAASGVESV EKLIKLLSQT QQLEQKQKQG  60
NFTCFLNQEK SSPMEIEIVA DAAVTKFKKV ISLLGGSRTG YARFRRAPIA SPLPPDHFKK  120
DYADSKVYCP TPIQQLPPIA YEFYNKFEKQ ESVTNTINFS YPPEICCSNS FNISTITGET  180
ESKYISNLSS VVKPPLSSSS SFKIRKCTSS ENGLSGMCSG SSGRCHCSKR RKLRLKRVVR  240
VPAISMKLSD IPPDDYSWRK YGQKPIKGSP HPRAYYKCSS VRGCPARKHV ERSLDEPTML  300
MVTYEGEHNH SLSIAETSCV ILESDQFVGN IIVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21240312273WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360211.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLM1CE460.0M1CE46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-66WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]