PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043249
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 366aa    MW: 41673 Da    PI: 8.5812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043249genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.56.1e-082332771761
                           HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                           A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +
  PGSC0003DMP400043249 233 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSM 277
                           89**********************************999876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-4222281IPR004827Basic-leucine zipper domain
CDDcd147032.55E-15224272No hitNo description
SuperFamilySSF579596.25E-6233275No hitNo description
Gene3DG3DSA:1.20.5.1706.0E-6233276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMYNGKSSLL PPKSPFPSMA PSYVDYVPSS AFNQKGIQKP REGHSHHQRT SSESCIIEEQ  60
PSWLDDLLNE PETHVRKGSH RRSSSDSFAY FDYANAANLD YTVQVDNKFR NMPHILSWGS  120
QDFDYYKDAR QTASFVDQNS SIRRKNREND VSSTTVSHLR SLSSPGEDLR IQRSGSPCLP  180
QDGDMSRSAG SDKQDVAESG PPYPKGSVEK KDSSQSKSSS SETDTKRAKQ QFAQRSRVRK  240
LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLENLA QEQLIKYLEH  300
EVLERERGRL RALYQQLHQQ PQPQQHKPSY SHRRSTSRDL DQQFANLTLK QKEAERDAVS  360
GQLHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133190.0BT013319.1 Lycopersicon esculentum clone 135006R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165035.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At4g06598-like
TrEMBLM1CBU50.0M1CBU5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27651733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.25e-90bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]