PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043212
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 321aa    MW: 37213.5 Da    PI: 7.866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043212genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.3e-121152344
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          i  +  r+ tf kR++g+lKK +E  +LC+++ ++i++++++
  PGSC0003DMP400043212 11 ITKEKSRNATFKKRKEGLLKKLYEFTTLCNVNGLMIMYGPKQ 52
                          566778999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-16161IPR002100Transcription factor, MADS-box
CDDcd002666.48E-17263No hitNo description
PRINTSPR004043.9E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAKLKMEL ITKEKSRNAT FKKRKEGLLK KLYEFTTLCN VNGLMIMYGP KQGNGSDSSP  60
EIWTNSSGST TTTTTKSLQQ QQQEIENLID EYKKENSLQS GSTKTFGLSD YFVDRNKKVE  120
EEFIKLRKMN MEKKYPCWLE FMDQLSEFKL RDFLTLLDDK VENVKTRINM LKGNFTDLME  180
GEMIGLGGGE QATRLTHYND NVMVQGGMEY GDYNQLQAPI YPYCNSFVNH HQEMRMLMMN  240
ENDWQYNNGA SSSGSNNMRC ALMKYETMMT HNMMGSNNQL TYVAPTILQP TPCMMMPQMQ  300
HSWIENERDD KTKFSPYMRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043212
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349424.10.0PREDICTED: agamous-like MADS-box protein AGL19
TrEMBLM1CBS40.0M1CBS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-17M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]