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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PGSC0003DMP400043024 |
Common Name | LOC102602867 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
MYB |
Protein Properties |
Length: 303aa MW: 34959.5 Da PI: 9.8693 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400043024 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++
PGSC0003DMP400043024 18 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +++++E+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ +
PGSC0003DMP400043024 70 RRPFSEDEEERLIGAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 114
679*******************.*********.***********987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MAEGGGSGDD TIRSSCQRGH WRPAEDERLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFSEDEEER LIGAHRIHGN KWALISRLFP GRTDNAVKNH WHVLMARKQR 120 EQSKICGKRS LYQQQQQQHD NFDSKSSCYG FRRRNNNNNN NNNNTRIQEG NYGSKINFFE 180 FQNPNKDRVF SMSTTYSSEF CGSHLFRESS IDQKSLCQNN LSFSSHGRGG GGGDNNCKRS 240 TTFQNPFSYA DRNERVVNIS HSTFSFGKIL RENIEQQQKY GEEAREKKDI PFIDFLGVGI 300 SS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 3e-30 | 18 | 118 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-29 | 18 | 118 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-29 | 18 | 118 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-30 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-30 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
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