PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400042972 | ||||||||
Common Name | LOC102591375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25609.9 Da PI: 7.2478 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.9 | 1.4e-19 | 29 | 78 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i n+ r+vtfskRr g++KKA+EL++L++ae+a+++ s ++++l+++ PGSC0003DMP400042972 29 KPITNQNSRHVTFSKRRLGLFKKASELCILTGAEIAIMVQSlKRQRLFTF 78 689************************************99567888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.002 | 21 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-24 | 21 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-22 | 22 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-19 | 31 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MNINNNTNAV NSAAVAVKKT QGRRKIAIKP ITNQNSRHVT FSKRRLGLFK KASELCILTG 60 AEIAIMVQSL KRQRLFTFGH PSADAVIDRY LTGKSEEEGV KSAGNDQFNY VQQSNEYYSQ 120 ICRELEAEKK VKEEIVIDES KMVNGGSNNG GGGFWWNEST DDMGIEELEK FMCALEELKK 180 KVNMRCDELS MINGSSSMAA AASTSSMNQA IDYCASIVPF DFNYPAGNAQ F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400042972 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356276.1 | 1e-173 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1CB92 | 1e-172 | M1CB92_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063794 | 1e-172 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-25 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400042972 |
Entrez Gene | 102591375 |
Publications ? help Back to Top | |||
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