PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042311
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 231aa    MW: 25764.9 Da    PI: 8.3202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042311genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019107129123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C k F+++  L  H++ H
  PGSC0003DMP400042311 107 YECHFCLKKFTNSRALGGHQNAH 129
                           99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.59E-6104134No hitNo description
Gene3DG3DSA:3.30.160.604.3E-4104133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDEALYQKST NLNLLSTGRN GTDNVCCKTT TSDKKLRIFG FEVNPCSNDI ICSKSESDQS  60
ISSSETFADE RLVEKTSICM NSSSIVLPNP NENLRNLSCS VVSEFKYECH FCLKKFTNSR  120
ALGGHQNAHR KERLKKKRMD LEAKRASSML HLYSLIRNTG VIYPYYSLSH QNLFVSGSSI  180
INFSSVYHYQ NGTHPLYVAV DAHPQGELQL QNNCSTSVQG GESRGRDLLS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067463.11e-135uncharacterized protein LOC107012202 isoform X1
TrEMBLM1C9N81e-169M1C9N8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628661e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA619466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-10C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]