PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042291
Common NameLOC102600330
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 292aa    MW: 30828.1 Da    PI: 5.7254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042291genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10174221455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  PGSC0003DMP400042291 174 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 221
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-18168240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-9168225No hitNo description
Gene3DG3DSA:4.10.280.104.4E-18170239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPPIINEGS FSAANPSSYT LAEIWPFAAA ANGGGNGELG GGGLGLRMSS FTGLLEAAAN  60
SINESTLTEQ SGRSGGGGGA GGGGGGGNVG VRKRDMNSED DFSKFVSTSD ANDLDGSVAK  120
RLKASQSKEE NGASKVEAES SSHTANKGTE QSSKPEPPKD YIHVRARRGQ ATDSHSLAER  180
ARREKISERM KILQDLVPGC NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRMNH  240
PIETYPSKDL APSAFDTTGM IFGTQAPREY AQGAQSEWLH MQVGNSFDRA T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-157HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344980.10.0PREDICTED: transcription factor bHLH79-like
SwissprotQ9LV177e-82BH079_ARATH; Transcription factor bHLH79
TrEMBLM1C9L80.0M1C9L8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]