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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400041980 |
| Common Name | LOC102589719 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
TALE |
| Protein Properties |
Length: 307aa MW: 33971 Da PI: 9.1991 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400041980 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.8 | 1e-09 | 104 | 136 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
++yp+ +++ LAk++gL+ +qV++WF N R +
PGSC0003DMP400041980 104 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 136
89*****************************88 PP
|
| 2 | BELL | 49.8 | 8.3e-17 | 1 | 41 | 32 | 72 |
BELL 32 tvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
+v++sFe vaglg+a+p++++A k++S+hF+ Lkdai++q+
PGSC0003DMP400041980 1 MVVASFESVAGLGNAAPFANIAIKTMSKHFKYLKDAIIDQL 41
79************************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010089 | Biological Process | xylem development |
| GO:0010154 | Biological Process | fruit development |
| GO:0010223 | Biological Process | secondary shoot formation |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048457 | Biological Process | floral whorl morphogenesis |
| GO:0048645 | Biological Process | organ formation |
| GO:0080006 | Biological Process | internode patterning |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MVVASFESVA GLGNAAPFAN IAIKTMSKHF KYLKDAIIDQ LQFTTSKSSH HMHGQINCER 60
AVGISGKGIY CQRQETQPVW RPQRGLPERA VTVLRAWLFD HFLHPYPTDS DKVMLAKQTG 120
LSRNQVSNWF INARVRLWKP MVEEIHMLET REGHNKSSQR EEPSNNNNDN NNPIEHFPMS 180
NSHVCESNTP STSTSRLQDL PSKRTRNELP NIPNNIGRVA DSINLSYNGN LSTGVGGGVS 240
LTLGLHQNSG NIGLSEPFPM NAARRFGIDN NTNSGRFIVG GFDEQNGQFG RNNTMVGGQF 300
LHDFGG*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Khan M, et al.
Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
Plant Physiol., 2015. 169(3): p. 2166-86
[PMID:26417006] - Andrés F, et al.
Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
Plant Physiol., 2015. 169(3): p. 2187-99
[PMID:26417007] - Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
Dev. Cell, 2016. 39(2): p. 198-208
[PMID:27666746] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
Front Plant Sci, 2017. 8: p. 1712
[PMID:29085379] - Simonini S,Stephenson P,Østergaard L
A molecular framework controlling style morphology in Brassicaceae.
Development, 2018.
[PMID:29440299]
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