PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041754
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BES1
Protein Properties Length: 857aa    MW: 96935.3 Da    PI: 8.6473
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041754genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822135.27.1e-42211352110
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssa 86 
                           ++ rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGtt+r++  p     +  ++    +
  PGSC0003DMP400041754  21 AASRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTFRQSPAPAptnaS--NMNDDPN 107
                           578*******************************************************************9999853221..2211111 PP

                DUF822  87 s...asp.esslqsslkssalaspvesy 110
                           s   + + + + +++ ++++++s  +sy
  PGSC0003DMP400041754 108 SalsILKrTCPAEKRNNNNNVPSVEKSY 135
                           1112222022223555555555555555 PP
2AP255.51.5e-17134182254
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                            y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+
  PGSC0003DMP400041754 134 SYRGVRNRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLR 182
                           69****777.**********32....25*********************98666 PP
3AP256.28.3e-18231280255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  PGSC0003DMP400041754 231 SYRGVRNRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 280
                           69****777.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.7E-4222135IPR008540BES1/BZR1 plant transcription factor, N-terminal
CDDcd000181.67E-14133169No hitNo description
SuperFamilySSF541711.44E-17134187IPR016177DNA-binding domain
PROSITE profilePS5103220.271134195IPR001471AP2/ERF domain
PfamPF008474.8E-12134182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-23134187IPR001471AP2/ERF domain
SMARTSM003805.2E-24134197IPR001471AP2/ERF domain
PRINTSPR003674.7E-9135146IPR001471AP2/ERF domain
PRINTSPR003674.7E-9157173IPR001471AP2/ERF domain
CDDcd000189.63E-18230289No hitNo description
PROSITE profilePS5103221.733231288IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-20231289IPR016177DNA-binding domain
PfamPF008474.5E-12231280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-28231288IPR001471AP2/ERF domain
SMARTSM003801.4E-30231294IPR001471AP2/ERF domain
Gene3DG3DSA:3.20.20.802.0E-171424853IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514456.32E-159424852IPR017853Glycoside hydrolase superfamily
PfamPF013731.1E-82447817IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52462476IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52483501IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52505526IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52598620IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52671690IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52705721IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52722733IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52740763IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.9E-52776798IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MIQTRITLFS PNPIPNLAVP AASRKEREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL  60
PVRADMNDVL AALARQAGWT VEPDGTTFRQ SPAPAPTNAS NMNDDPNSAL SILKRTCPAE  120
KRNNNNNVPS VEKSYRGVRN RPWGRWSAEI RDRIGRCRHW LGTFDTPEEA ARAYDAAARW  180
LRGIAAVVGE HVLFGYNNNE NKNDDPNSAV SILKRTCPAE KRNNVPSVEK SYRGVRNRPW  240
GRWSAEIRDR IGRCRHWLGT FDTPEEAARA YDAAARWLRG SKARTNFQIP PIVPLPTSPT  300
STSSSSNSSR EMKMKMKMKN GGAVANNQRK CSVGTYQVMS VESPVSGSSF RNCSTRASVD  360
GQPSVPRINE SLSPASFDSI VVTESDTKVD KFTSTSPMNS TGCLEAGQLM QELHCGEHGS  420
SFAETQYVPV FVMLSSGVIN NFCQLMDPDG VKQELQQLKS LKIDGVVVNC WWGIVESWVP  480
QKYEWSGYRE LFKIIRDFNM KLQVVMAFHE NGGSDTSGMF ISLPQWVLEI GKDNQDIFFT  540
DRQGRRNTEC LSWGIDKERV LRGRTAIEVY FDLMRSFRTE FDDLFTDGLI SAVEIGLGAS  600
GELKYPSFSE RMGWRYPGIG EFQCYDKYSL QNLRKAATSR GHSFWAKGPD NAGYYNSKPH  660
ETGFFCERGD YDSYYGRFFL HWYRQVLIDH ADNVLTLATL AFEGIQIVVK IPAIYWWYRT  720
SSHAAELTAG YYNPTNQDGY SPVFEVLKKH SVTIKFVSSG LQVPETDDAL ADPEGLSWQI  780
MNSAWDKEIN VAGNNAFPCY DREGFMRLVE TAKPRNDPDR HRFSFFAFQQ PSPLVQSAIC  840
FSELDYFIKC MHGIVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12242785311443Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9062420.0GU906242.1 Solanum tuberosum clone BAC BC206B16 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361593.10.0PREDICTED: beta-amylase 8, partial
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLM1C8E50.0M1C8E5_SOLTU; Beta-amylase
STRINGPGSC0003DMT4000620500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]