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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400041383 |
Common Name | LOC102586400 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
LBD |
Protein Properties |
Length: 172aa MW: 18987.7 Da PI: 6.0774 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400041383 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 138.2 | 2.9e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasn++k+l+++p +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q+ q
PGSC0003DMP400041383 7 PCASCKLLRRRCAKDCIFSPYFPCDDPHKFAIVHKVFGASNISKMLQEVPVNERADAVSSLVYEANARMRDPVYGCVGAISYLQNQVTQ 95
7**************************************************************************************** PP
DUF260 90 lkaelallkee 100
l+ +la++++e
PGSC0003DMP400041383 96 LQMQLAMAQAE 106
******99987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC DDPHKFAIVH KVFGASNISK MLQEVPVNER 60 ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVTQLQMQL AMAQAEILCI QMQSEPPQAA 120 AAAAFPMTPD NQLVPNDHDI DKSFFLSDQY LNFDSTSHKC CNSQDGLFLW R*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975445 | 1e-152 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |