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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400041309 | ||||||||
Common Name | LOC102586775 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 228aa MW: 24904.9 Da PI: 10.303 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.8 | 7.3e-16 | 156 | 204 | 4 | 52 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +++ +r++kNRe+A rsR+RK+a++ eLe +v++L +eN +Lk + ++l PGSC0003DMP400041309 156 DQKSKRMIKNRESAARSRARKQAYTNELEMEVANLMEENARLKRQQQQL 204 6799***************************************887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.0E-12 | 153 | 222 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 155 | 204 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.2E-13 | 156 | 204 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.67E-24 | 157 | 207 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-11 | 158 | 204 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-13 | 158 | 204 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 160 | 175 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MWSSSNEEHQ GLNKNLATNS SKSSSSSSST SCSYNHPINP ILINSKTMEE VWKDINLSCS 60 RDPQNTTAGG IILQDLLARP FANNPSTAAA YGSPVPPLPP PPVTMLTLNS GPEFHFFSTL 120 NPIRQTQQKN ISNEGLASPA PGRKRHPESN NNNSGDQKSK RMIKNRESAA RSRARKQAYT 180 NELEMEVANL MEENARLKRQ QQQLCLASAG ALLPKMKSLN RTSTAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400041309 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-123 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361944.1 | 1e-166 | PREDICTED: bZIP transcription factor 27-like | ||||
Swissprot | Q84JK2 | 7e-37 | FD_ARATH; Protein FD | ||||
TrEMBL | M1C7G1 | 1e-165 | M1C7G1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061403 | 1e-165 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3572 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 2e-34 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400041309 |
Entrez Gene | 102586775 |