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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 124aa MW: 13219.8 Da PI: 10.085 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 61 | 83 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L++H ++ H PGSC0003DMP400040974 61 QCPQCTLRFSSVTALVSHVQKvH 83 7******************9988 PP | |||||||
2 | zf-C2H2 | 17.8 | 9.2e-06 | 95 | 117 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H PGSC0003DMP400040974 95 VCPRCSKGFRDPVSLVEHVEReH 117 7*****************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.017 | 60 | 83 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 2.2E-4 | 61 | 83 | No hit | No description |
SuperFamily | SSF57667 | 1.51E-5 | 61 | 113 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 62 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.2 | 94 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 94 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MNFRTGSRKD EPKKAPATSS SSWASSFYKA AEAGIAKLST GRGQSSNATN HSGNANGQVE 60 QCPQCTLRFS SVTALVSHVQ KVHEKNGVMN LTVDVCPRCS KGFRDPVSLV EHVEREHKGT 120 SKA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400040974 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-155 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351319.1 | 5e-84 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
Refseq | XP_015165934.1 | 5e-84 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
Refseq | XP_015165935.1 | 5e-84 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
Swissprot | Q8VZ42 | 1e-29 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | M1C6L9 | 2e-86 | M1C6L9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060887 | 2e-83 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 6e-31 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040974 |
Publications ? help Back to Top | |||
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