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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040959 | ||||||||
Common Name | LOC102593688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 462aa MW: 52241.6 Da PI: 6.9576 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.3e-10 | 167 | 199 | 5 | 37 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvke 37 k rr+++NReAAr+sR RKka++++Le+ PGSC0003DMP400040959 167 KTLRRLAQNREAARKSRIRKKAYVQQLETSRVR 199 7789***********************985444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-8 | 157 | 211 | No hit | No description |
Pfam | PF07716 | 6.7E-8 | 163 | 209 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.8E-6 | 163 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.772 | 165 | 209 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.41E-7 | 167 | 206 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 170 | 185 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.5E-29 | 259 | 334 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MDSSKNQISF INQHQFFHDP QQQQQQQMEN HKNHQISFGL SSTNPENFIS KENNGGAYDL 60 GELDQALFLY LDGQDPSSSS IQDQRQNNYG MRPPTLNIFP SQPMHIEPSS TKANNNALVS 120 QATNGSKKSS QPSIDKSEPP KVTKGEGSRK VPTSSPEQDT PKTSDPKTLR RLAQNREAAR 180 KSRIRKKAYV QQLETSRVRL SQLEHEIQRA RSQGFHVGGN VLLGGDQGFQ LINRTNISSD 240 AAVFDLEYAR WLEEHHRLIC ELRNAVHEEQ LQEDELRIYV ENCVVHYDNI MNLKGMLAKS 300 DVFHLVSGLW KSPAERCFLW IGDFRPSELL KIIMCQIEAL TENQLLGMCG LQKSTQEAED 360 ALSQGLEALN QSLSDTIIAS DALILGNNNE NMGNYMALAI NQLSTVEAFL RQADNLRHQT 420 IHRLLQILTT RQAARCFIAI GDYFHRLRAL SSLWLARPRH E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400040959 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244286 | 1e-138 | AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence. | |||
GenBank | HG975522 | 1e-138 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165945.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like | ||||
Swissprot | Q52MZ2 | 0.0 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | M1C6K4 | 0.0 | M1C6K4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060865 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2279 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-164 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040959 |
Entrez Gene | 102593688 |
Publications ? help Back to Top | |||
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