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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 139aa MW: 15819.3 Da PI: 9.8444 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00072 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H PGSC0003DMP400040762 27 FECKTCNRQFSSFQALGGHRASH 49 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0017 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H PGSC0003DMP400040762 72 HECSICGLEFPIGQALGGHMRRH 94 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.41E-9 | 25 | 94 | No hit | No description |
Pfam | PF13912 | 8.2E-13 | 26 | 51 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.4E-11 | 71 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.203 | 72 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MANYLLLFSR QENHFDTMVN NSPSRVFECK TCNRQFSSFQ ALGGHRASHK KPRLMGELNF 60 QLPISPPKPK THECSICGLE FPIGQALGGH MRRHRGILNE NNNKNIQVHH VVKKLKSPRV 120 LCLDLNLPPL ENDHLEFL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400040762 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC205681 | 1e-128 | AC205681.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0025A19, complete sequence. | |||
GenBank | HG975517 | 1e-128 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345938.1 | 1e-98 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q681X4 | 2e-29 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | M1C622 | 8e-97 | M1C622_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060523 | 1e-97 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-35 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040762 |
Publications ? help Back to Top | |||
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